Publications
SNSF Professeur Boursier
Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome.
 
2019, Panfilio KA, Vargas Jentzsch IM, Benoit JB, Erezyilmaz D, Suzuki Y, Colella S, Robertson HM, Poelchau MF, Waterhouse RM , et al.
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Draft genome assembly and population genetics of an agricultural pollinator, the solitary alkali bee (Halictidae: Nomia melanderi).
 
2019, Kapheim KM, Pan H, Li C, Blatti C 3rd, Harpur BA, Ioannidis P, Jones BM, Kent CF, Ruzzante L , Sloofman L, Stolle E, Waterhouse RM , Zayed A, Zhang G, Wcislo WT.
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Phylogenomics of the superfamily Dytiscoidea (Coleoptera: Adephaga) with an evaluation of phylogenetic conflict and systematic error.
 
2019, Vasilikopoulos A, Balke M, Beutel RG, Donath A, Podsiadlowski L, Pflug JM, Waterhouse RM , Meusemann K, Peters RS, Escalona HE, Mayer C, Liu S, Hendrich L, Alarie Y, Bilton DT, Jia F, Zhou X, Maddison DR, Niehuis O, Misof B.
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Insights into an unexplored component of the mosquito repeatome: distribution and variability of viral sequences integrated into the genome of the arboviral vector Aedes albopictus.
 
2019, Pischedda E, Scolari F, Valerio F, Carballar-Lejarazú R, Catapano PL, Waterhouse RM , Bonizzoni M.
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Using BUSCO to assess insect genomic resources.

 Methods in Molecular Biology book series: Insect Genomics
 
2019, Waterhouse RM, Seppey M, Simão FA, Zdobnov EM.
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Of genes and genomes: mosquito evolution and diversity.

Trends in Parasitology, Feature Review, with video
 
2019, Ruzzante L , Reijnders MJMF , Waterhouse RM.
Phylogenomics and the evolution of hemipteroid insects.
 
2018, Johnson KP, Dietrich CH, Friedrich F, Beutel RG, Wipfler B, Peters RS, Allen JM, Petersen M, Donath A,  Walden KKO, Kozlov AM, Podsiadlowski L, Mayer C, Meusemann K, Vasilikopoulos A, Waterhouse RM , et al.
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Genome sequence of the wheat stem sawfly, Cephus cinctus, representing an early-branching lineage of the Hymenoptera, illuminates evolution of hymenopteran chemoreceptors.
 
2018, Robertson HM•, Waterhouse RM •, Walden KKO, Ruzzante L , Reijnders MJMF , Coates BS, Legeai F, Gress JC, Biyiklioglu S, et al.
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BUSCO applications from quality assessments to gene prediction and phylogenomics.
 
2018,  Waterhouse RM, Seppey M, Simão FA, Manni M, Ioannidis P, Klioutchnikov G, Kriventseva EV, Zdobnov EM.
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The novel evolution of the sperm whale genome.
 
2017, Warren WC, Kuderna L, Alexander A, Catchen J, Pérez-Silva JG, López-Otín C, Quesada V, Minx P, Tomlinson C, Farias FHG, Walter RB, Marques-Bonet T, Glenn T, Kieran TJ, Wise SS, Wise JP Jr, Waterhouse RM, Wise JP Sr.
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Rapid evolution of female-biased genes among four species of Anopheles malaria mosquitoes.
 
2017, Papa F, Windbichler N, Waterhouse RM , Cagnetti A, D'Amato R, Persampieri T, Lawniczak MKN, Nolan T, Papathanos PA.
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The third International Workshop on Aedes albopictus: building scientific alliances in the fight against the globally invasive Asian tiger mosquito.
 
2017, Waterhouse RM , IWAA (International Workshop on Aedes albopictus) Participants, Chen X, Bonizzoni M, Gasperi G.
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